util.py

import metpy
import numpy as np
import xarray as xr
import datetime
from datetime import timezone
from metpy.units import units
from metpy.calc import thickness_hydrostatic
from collections import namedtuple
import os
import h5py
import pickle
from netCDF4 import Dataset
from util.setup import ancillary_path
from scipy.interpolate import RectBivariateSpline, interp2d
from scipy.ndimage import gaussian_filter
from scipy.signal import medfilt2d

LatLonTuple = namedtuple('LatLonTuple', ['lat', 'lon'])

homedir = os.path.expanduser('~') + '/'

# --- CLAVRx Radiometric parameters and metadata ------------------------------------------------
l1b_ds_list = ['temp_10_4um_nom', 'temp_11_0um_nom', 'temp_12_0um_nom', 'temp_13_3um_nom', 'temp_3_75um_nom',
               'temp_6_2um_nom', 'temp_6_7um_nom', 'temp_7_3um_nom', 'temp_8_5um_nom', 'temp_9_7um_nom',
               'refl_0_47um_nom', 'refl_0_65um_nom', 'refl_0_86um_nom', 'refl_1_38um_nom', 'refl_1_60um_nom']

l1b_ds_types = {ds: 'f4' for ds in l1b_ds_list}
l1b_ds_fill = {l1b_ds_list[i]: -32767 for i in range(10)}
l1b_ds_fill.update({l1b_ds_list[i+10]: -32768 for i in range(5)})
l1b_ds_range = {ds: 'actual_range' for ds in l1b_ds_list}

# --- CLAVRx L2 parameters and metadata
ds_list = ['cld_height_acha', 'cld_geo_thick', 'cld_press_acha', 'sensor_zenith_angle', 'supercooled_prob_acha',
           'supercooled_cloud_fraction', 'cld_temp_acha', 'cld_opd_acha', 'solar_zenith_angle',
           'cld_reff_acha', 'cld_reff_dcomp', 'cld_reff_dcomp_1', 'cld_reff_dcomp_2', 'cld_reff_dcomp_3',
           'cld_opd_dcomp', 'cld_opd_dcomp_1', 'cld_opd_dcomp_2', 'cld_opd_dcomp_3', 'cld_cwp_dcomp', 'iwc_dcomp',
           'lwc_dcomp', 'cld_emiss_acha', 'conv_cloud_fraction', 'cloud_type', 'cloud_phase', 'cloud_mask']

ds_types = {ds_list[i]: 'f4' for i in range(23)}
ds_types.update({ds_list[i+23]: 'i1' for i in range(3)})
ds_fill = {ds_list[i]: -32768 for i in range(23)}
ds_fill.update({ds_list[i+23]: -128 for i in range(3)})
ds_range = {ds_list[i]: 'actual_range' for i in range(23)}
ds_range.update({ds_list[i]: None for i in range(3)})

ds_types.update(l1b_ds_types)
ds_fill.update(l1b_ds_fill)
ds_range.update(l1b_ds_range)

ds_types.update({'temp_3_9um_nom': 'f4'})
ds_types.update({'cloud_fraction': 'f4'})
ds_fill.update({'temp_3_9um_nom': -32767})
ds_fill.update({'cloud_fraction': -32768})
ds_range.update({'temp_3_9um_nom': 'actual_range'})
ds_range.update({'cloud_fraction': 'actual_range'})


def get_fill_attrs(name):
    if name in ds_fill:
        v = ds_fill[name]
        if v is None:
            return None, '_FillValue'
        else:
            return v, None
    else:
        return None, '_FillValue'


class GenericException(Exception):
    def __init__(self, message):
        self.message = message


class EarlyStop:
    def __init__(self, window_length=3, patience=5):
        self.patience = patience
        self.min = np.finfo(np.single).max
        self.cnt = 0
        self.cnt_wait = 0
        self.window = np.zeros(window_length, dtype=np.single)
        self.window.fill(np.nan)

    def check_stop(self, value):
        self.window[:-1] = self.window[1:]
        self.window[-1] = value

        if np.any(np.isnan(self.window)):
            return False

        ave = np.mean(self.window)
        if ave < self.min:
            self.min = ave
            self.cnt_wait = 0
            return False
        else:
            self.cnt_wait += 1

        if self.cnt_wait > self.patience:
            return True
        else:
            return False


def get_time_tuple_utc(timestamp):
    dt_obj = datetime.datetime.fromtimestamp(timestamp, timezone.utc)
    return dt_obj, dt_obj.timetuple()


def get_datetime_obj(dt_str, format_code='%Y-%m-%d_%H:%M'):
    dto = datetime.datetime.strptime(dt_str, format_code).replace(tzinfo=timezone.utc)
    return dto


def get_timestamp(dt_str, format_code='%Y-%m-%d_%H:%M'):
    dto = datetime.datetime.strptime(dt_str, format_code).replace(tzinfo=timezone.utc)
    ts = dto.timestamp()
    return ts


def add_time_range_to_filename(pathname, tstart, tend=None):
    filename = os.path.split(pathname)[1]
    w_o_ext, ext = os.path.splitext(filename)

    dt_obj, _ = get_time_tuple_utc(tstart)
    str_start = dt_obj.strftime('%Y%m%d%H')
    filename = w_o_ext+'_'+str_start

    if tend is not None:
        dt_obj, _ = get_time_tuple_utc(tend)
        str_end = dt_obj.strftime('%Y%m%d%H')
        filename = filename+'_'+str_end
    filename = filename+ext

    path = os.path.split(pathname)[0]
    path = path+'/'+filename
    return path


def haversine_np(lon1, lat1, lon2, lat2, earth_radius=6367.0):
    """
    Calculate the great circle distance between two points
    on the earth (specified in decimal degrees)

    (lon1, lat1) must be broadcastable with (lon2, lat2).
    """

    lon1, lat1, lon2, lat2 = map(np.radians, [lon1, lat1, lon2, lat2])

    dlon = lon2 - lon1
    dlat = lat2 - lat1

    a = np.sin(dlat/2.0)**2 + np.cos(lat1) * np.cos(lat2) * np.sin(dlon/2.0)**2

    c = 2.0 * np.arcsin(np.sqrt(a))
    km = earth_radius * c
    return km


def bin_data_by(a, b, bin_ranges):
    nbins = len(bin_ranges)
    binned_data = []

    for i in range(nbins):
        rng = bin_ranges[i]
        idxs = (b >= rng[0]) & (b < rng[1])
        binned_data.append(a[idxs])

    return binned_data


def bin_data_by_edges(a, b, edges):
    nbins = len(edges) - 1
    binned_data = []

    for i in range(nbins):
        idxs = (b >= edges[i]) & (b < edges[i+1])
        binned_data.append(a[idxs])

    return binned_data


def get_bin_ranges(lop, hip, bin_size=100):
    bin_ranges = []
    delp = hip - lop
    nbins = int(delp/bin_size)

    for i in range(nbins):
        rng = [lop + i*bin_size, lop + i*bin_size + bin_size]
        bin_ranges.append(rng)

    return bin_ranges


# t must be monotonic increasing
def get_breaks(t, threshold):
    t_0 = t[0:t.shape[0]-1]
    t_1 = t[1:t.shape[0]]
    d = t_1 - t_0
    idxs = np.nonzero(d > threshold)
    return idxs