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Commit 059f226b authored by Nick Bearson's avatar Nick Bearson
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adding ${BUILD} & ${OPT} & some bin folders to ${PATH}

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...@@ -3,12 +3,13 @@ ...@@ -3,12 +3,13 @@
FROM gcc:latest FROM gcc:latest
ENV BUILD /build
ENV OPT /opt
ENV ZLIB_VERSION 1.2.8 ENV ZLIB_VERSION 1.2.8
ENV JPEG_VERSION 6b ENV JPEG_VERSION 6b
ENV SZIP_VERSION 2.1 ENV SZIP_VERSION 2.1
ENV HDF4_VERSION 4.2.12 ENV HDF4_VERSION 4.2.12
# for pre-libdl dependency:
#ENV HDF5_VERSION 1.8.10-patch1
ENV HDF5_VERSION 1.8.17 ENV HDF5_VERSION 1.8.17
ENV NC4F_VERSION 4.4.4 ENV NC4F_VERSION 4.4.4
ENV NC4C_VERSION 4.4.1 ENV NC4C_VERSION 4.4.1
...@@ -20,92 +21,97 @@ RUN apt-get update && apt-get install -y byacc bison diffutils flex make ...@@ -20,92 +21,97 @@ RUN apt-get update && apt-get install -y byacc bison diffutils flex make
RUN apt-get install -y vim RUN apt-get install -y vim
# this is our install dir for everything non-core # this is our install dir for everything non-core
RUN mkdir -p /opt RUN mkdir -p ${OPT}
# add zlib # add zlib
#RUN apt-get install -y zlib-devel #RUN apt-get install -y zlib-devel
RUN mkdir -p /build && cd /build && \ RUN mkdir -p ${BUILD} && cd ${BUILD} && \
curl -O http://zlib.net/zlib-${ZLIB_VERSION}.tar.gz && \ curl -O http://zlib.net/zlib-${ZLIB_VERSION}.tar.gz && \
tar xzf zlib-${ZLIB_VERSION}.tar.gz && \ tar xzf zlib-${ZLIB_VERSION}.tar.gz && \
cd zlib-${ZLIB_VERSION} && \ cd zlib-${ZLIB_VERSION} && \
./configure && make -j4 && make install && \ ./configure && make -j4 && make install && \
cp configure.log /opt/config.log-zlib-${ZLIB_VERSION} && \ cp configure.log ${OPT}/config.log-zlib-${ZLIB_VERSION} && \
rm -rf /build rm -rf ${BUILD}
# add libjpeg # add libjpeg
#RUN apt-get install -y jpeg-devel #RUN apt-get install -y jpeg-devel
RUN mkdir -p /build && cd /build && \ RUN mkdir -p ${BUILD} && cd ${BUILD} && \
curl -O https://www.hdfgroup.org/ftp/lib-external/jpeg/src/jpegsrc.v${JPEG_VERSION}.tar.gz && \ curl -O https://www.hdfgroup.org/ftp/lib-external/jpeg/src/jpegsrc.v${JPEG_VERSION}.tar.gz && \
tar xzf jpegsrc.v${JPEG_VERSION}.tar.gz && \ tar xzf jpegsrc.v${JPEG_VERSION}.tar.gz && \
cd jpeg-${JPEG_VERSION} && \ cd jpeg-${JPEG_VERSION} && \
./configure && make -j4 && make install && \ ./configure && make -j4 && make install && \
cp config.log /opt/config.log-jpeg-${JPEG_VERSION} && \ cp config.log ${OPT}/config.log-jpeg-${JPEG_VERSION} && \
rm -rf /build rm -rf ${BUILD}
## add szip ## add szip
#RUN mkdir -p /build && cd /build && curl -O https://www.hdfgroup.org/ftp/lib-external/szip/${SZIP_VERSION}/src/szip-${SZIP_VERSION}.tar.gz && \ #RUN mkdir -p ${BUILD} && cd ${BUILD} && curl -O https://www.hdfgroup.org/ftp/lib-external/szip/${SZIP_VERSION}/src/szip-${SZIP_VERSION}.tar.gz && \
# tar zxf szip-${SZIP_VERSION}.tar.gz && \ # tar zxf szip-${SZIP_VERSION}.tar.gz && \
# cd szip-${SZIP_VERSION} && \ # cd szip-${SZIP_VERSION} && \
# ./configure --prefix="/usr" --disable-shared --with-pic && make -j4 && make install && \ # ./configure --prefix="/usr" --disable-shared --with-pic && make -j4 && make install && \
# cp config.log /config/config.log-szip-${SZIP_VERSION} && \ # cp config.log /config/config.log-szip-${SZIP_VERSION} && \
# rm -rf /build # rm -rf ${BUILD}
# add hdf4 # add hdf4
RUN mkdir -p /build /opt/hdf4 && cd /build && \ RUN mkdir -p ${BUILD} ${OPT}/hdf4 && cd ${BUILD} && \
curl -O http://www.hdfgroup.org/ftp/HDF/releases/HDF${HDF4_VERSION}/src/hdf-${HDF4_VERSION}.tar.gz && \ curl -O http://www.hdfgroup.org/ftp/HDF/releases/HDF${HDF4_VERSION}/src/hdf-${HDF4_VERSION}.tar.gz && \
tar xzf hdf-${HDF4_VERSION}.tar.gz && \ tar xzf hdf-${HDF4_VERSION}.tar.gz && \
cd hdf-${HDF4_VERSION} && \ cd hdf-${HDF4_VERSION} && \
CFLAGS="-fPIC -DHAVE_NETCDF -fno-strict-aliasing" \ CFLAGS="-fPIC -DHAVE_NETCDF -fno-strict-aliasing" \
CXXFLAGS="-fPIC -DHAVE_NETCDF -fno-strict-aliasing" \ CXXFLAGS="-fPIC -DHAVE_NETCDF -fno-strict-aliasing" \
./configure --prefix="/opt/hdf4" --disable-netcdf --enable-fortran && make -j4 && make install && \ ./configure --prefix="${OPT}/hdf4" --disable-netcdf --enable-fortran && make -j4 && make install && \
cp config.log /opt/hdf4/config.log-hdf4-${HDF4_VERSION} && \ mv ${OPT}/hdf4/bin/ncdump ${OPT}/hdf4/bin/hdfdump && \
rm -rf /build mv ${OPT}/hdf4/bin/ncgen ${OPT}/hdf4/bin/hdfgen && \
cp config.log ${OPT}/hdf4/config.log-hdf4-${HDF4_VERSION} && \
rm -rf ${BUILD}
# add hdf5 # add hdf5
# note - hdf5 post-1.8.11 now includes -ldl as a dependency # note - hdf5 post-1.8.11 now includes -ldl as a dependency
# http://hdf-forum.184993.n3.nabble.com/Errors-compiling-against-Static-build-HDF5-1-8-11-Need-for-ldl-added-to-linker-arguments-td4026300.html # http://hdf-forum.184993.n3.nabble.com/Errors-compiling-against-Static-build-HDF5-1-8-11-Need-for-ldl-added-to-linker-arguments-td4026300.html
RUN mkdir -p /build /opt/hdf5 && cd /build && \ RUN mkdir -p ${BUILD} ${OPT}/hdf5 && cd ${BUILD} && \
curl -O https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-${HDF5_VERSION}/src/hdf5-${HDF5_VERSION}.tar.gz && \ curl -O https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-${HDF5_VERSION}/src/hdf5-${HDF5_VERSION}.tar.gz && \
tar xzf hdf5-${HDF5_VERSION}.tar.gz && \ tar xzf hdf5-${HDF5_VERSION}.tar.gz && \
cd hdf5-${HDF5_VERSION} && \ cd hdf5-${HDF5_VERSION} && \
./configure --prefix="/opt/hdf5" --with-pic --with-zlib="/opt/zlib" --enable-cxx --enable-fortran --enable-fortran2003 --with-pthread && make -j4 && make install && \ ./configure --prefix="${OPT}/hdf5" --with-pic --with-zlib="${OPT}/zlib" --enable-cxx --enable-fortran --enable-fortran2003 --with-pthread && make -j4 && make install && \
cp config.log /opt/hdf5/config.log-hdf5-${HDF5_VERSION} && \ cp config.log ${OPT}/hdf5/config.log-hdf5-${HDF5_VERSION} && \
rm -rf /build rm -rf ${BUILD}
# add netcdf-c # add netcdf-c
RUN mkdir -p /build /opt/netcdf4 && cd /build && \ RUN mkdir -p ${BUILD} ${OPT}/netcdf4 && cd ${BUILD} && \
curl -O ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-${NC4C_VERSION}.tar.gz && \ curl -O ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-${NC4C_VERSION}.tar.gz && \
tar xzf netcdf-${NC4C_VERSION}.tar.gz && \ tar xzf netcdf-${NC4C_VERSION}.tar.gz && \
cd netcdf-${NC4C_VERSION} && \ cd netcdf-${NC4C_VERSION} && \
CPPFLAGS="-I/opt/hdf4/include -I/opt/hdf5/include" \ CPPFLAGS="-I${OPT}/hdf4/include -I${OPT}/hdf5/include" \
LDFLAGS="-L/opt/hdf4/lib -L/opt/hdf5/lib" \ LDFLAGS="-L${OPT}/hdf4/lib -L${OPT}/hdf5/lib" \
LD_LIBRARY_PATH="/opt/zlib/lib:/opt/jpeg/lib:/opt/hdf4/lib:/opt/hdf5/lib" \ LD_LIBRARY_PATH="${OPT}/zlib/lib:${OPT}/jpeg/lib:${OPT}/hdf4/lib:${OPT}/hdf5/lib" \
LIBS="-ldf -lhdf5_hl -lhdf5 -ljpeg -lm -lz" \ LIBS="-ldf -lhdf5_hl -lhdf5 -ljpeg -lm -lz" \
./configure --prefix="/opt/netcdf4" --enable-hdf4 --disable-dap --with-pic && make -j4 && make install && \ ./configure --prefix="${OPT}/netcdf4" --enable-hdf4 --disable-dap --with-pic && make -j4 && make install && \
cp config.log /opt/netcdf4/config.log-netcdf-${NC4C_VERSION} && \ cp config.log ${OPT}/netcdf4/config.log-netcdf-${NC4C_VERSION} && \
rm -rf /build rm -rf ${BUILD}
# add netcdf-fortran # add netcdf-fortran
# compiling against this requires -lnetcdff (note the extra f) # compiling against this requires -lnetcdff (note the extra f)
RUN mkdir -p /build /opt/netcdf4 && cd /build && \ RUN mkdir -p ${BUILD} ${OPT}/netcdf4 && cd ${BUILD} && \
curl -O ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-fortran-${NC4F_VERSION}.tar.gz && \ curl -O ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-fortran-${NC4F_VERSION}.tar.gz && \
tar xzf netcdf-fortran-${NC4F_VERSION}.tar.gz && \ tar xzf netcdf-fortran-${NC4F_VERSION}.tar.gz && \
cd netcdf-fortran-${NC4F_VERSION} && \ cd netcdf-fortran-${NC4F_VERSION} && \
CPPFLAGS="-I/opt/hdf4/include -I/opt/hdf5/include -I/opt/netcdf4/include" \ CPPFLAGS="-I${OPT}/hdf4/include -I${OPT}/hdf5/include -I${OPT}/netcdf4/include" \
LDFLAGS="-L/opt/hdf4/lib -L/opt/hdf5/lib -L/opt/netcdf4/lib" \ LDFLAGS="-L${OPT}/hdf4/lib -L${OPT}/hdf5/lib -L${OPT}/netcdf4/lib" \
LD_LIBRARY_PATH="/opt/hdf4/lib:/opt/hdf5/lib:/opt/netcdf4/lib" \ LD_LIBRARY_PATH="${OPT}/hdf4/lib:${OPT}/hdf5/lib:${OPT}/netcdf4/lib" \
LIBS="-lnetcdf -ldf -lhdf5_hl -lhdf5 -ljpeg -lm -lz" \ LIBS="-lnetcdf -ldf -lhdf5_hl -lhdf5 -ljpeg -lm -lz" \
./configure --prefix="/opt/netcdf4" --disable-dap --with-pic && make -j4 && make install && \ ./configure --prefix="${OPT}/netcdf4" --disable-dap --with-pic && make -j4 && make install && \
cp config.log /opt/netcdf4/config.log-netcdff-${NC4F_VERSION} && \ cp config.log ${OPT}/netcdf4/config.log-netcdff-${NC4F_VERSION} && \
rm -rf /build rm -rf ${BUILD}
# throw in some minor shell niceties # throw in some shell niceties
RUN echo 'alias ls="ls --color=auto"' >> ~/.bashrc && \ RUN echo 'alias ls="ls --color=auto"' >> ~/.bashrc && \
echo 'alias ll="ls -lGh $@"' >> ~/.bashrc echo 'alias ll="ls -lGh $@"' >> ~/.bashrc
RUN echo "export HDF4=/opt/hdf4" >> ~/.bashrc && \ RUN echo "export HDF4=${OPT}/hdf4" >> ~/.bashrc && \
echo "export HDF5=/opt/hdf5" >> ~/.bashrc && \ echo "export HDF5=${OPT}/hdf5" >> ~/.bashrc && \
echo "export NETCDF=/opt/netcdf4" >> ~/.bashrc && \ echo "export NETCDF=${OPT}/netcdf4" >> ~/.bashrc && \
echo "export LD_LIBRARY_PATH=${HDF4}/lib:${HDF5}/lib:${NETCDF}/lib:${LD_LIBRARY_PATH}" >> ~/.bashrc && \ echo "export LD_LIBRARY_PATH=${HDF4}/lib:${HDF5}/lib:${NETCDF}/lib:${LD_LIBRARY_PATH}" >> ~/.bashrc && \
echo "" >> ~/.bashrc echo "" >> ~/.bashrc
RUN echo "export PATH=${HDF4}/bin/:${HDF5}/bin:${NETCDF}/bin:${PATH}" >> ~/.bashrc && \
echo "" >> ~/.bashrc
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