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Nick Bearson
docker-science-stack
Commits
662dbeed
Commit
662dbeed
authored
8 years ago
by
Nick Bearson
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move download, build, and removal into a single RUN command to save space
parent
4c68c19b
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662dbeed
...
...
@@ -19,78 +19,85 @@ RUN apt-get update && apt-get install -y byacc bison diffutils flex make
# grab some convenience packages for using it as a build "machine"
RUN
apt-get
install
-y
vim
# get ready to build things
RUN
mkdir
-p
/build /usr/man/man1 /opt
# perform downloads first so they get cached during development; does it make any difference afterwards?
RUN
cd
/build
&&
curl
-O
http://zlib.net/zlib-
${
ZLIB_VERSION
}
.tar.gz
RUN
cd
/build
&&
curl
-O
https://www.hdfgroup.org/ftp/lib-external/jpeg/src/jpegsrc.v
${
JPEG_VERSION
}
.tar.gz
RUN
cd
/build
&&
curl
-O
https://www.hdfgroup.org/ftp/lib-external/szip/
${
SZIP_VERSION
}
/src/szip-
${
SZIP_VERSION
}
.tar.gz
RUN
cd
/build
&&
curl
-O
http://www.hdfgroup.org/ftp/HDF/releases/HDF
${
HDF4_VERSION
}
/src/hdf-
${
HDF4_VERSION
}
.tar.gz
RUN
cd
/build
&&
curl
-O
https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-
${
HDF5_VERSION
}
/src/hdf5-
${
HDF5_VERSION
}
.tar.gz
RUN
cd
/build
&&
curl
-O
ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-
${
NC4C_VERSION
}
.tar.gz
RUN
cd
/build
&&
curl
-O
ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-fortran-
${
NC4F_VERSION
}
.tar.gz
# this is our install dir for everything non-core
RUN
mkdir
-p
/opt
# add zlib
#RUN apt-get install -y zlib-devel
RUN
cd
/build
&&
tar
xzf zlib-
${
ZLIB_VERSION
}
.tar.gz
&&
\
RUN
mkdir
-p
/build
&&
cd
/build
&&
\
curl
-O
http://zlib.net/zlib-
${
ZLIB_VERSION
}
.tar.gz
&&
\
tar
xzf zlib-
${
ZLIB_VERSION
}
.tar.gz
&&
\
cd
zlib-
${
ZLIB_VERSION
}
&&
\
./configure
&&
make
-j4
&&
make
install
&&
\
cp
configure.log /opt/config.log-zlib-
${
ZLIB_VERSION
}
cp
configure.log /opt/config.log-zlib-
${
ZLIB_VERSION
}
&&
\
rm
-rf
/build
# add libjpeg
#RUN apt-get install -y jpeg-devel
RUN
cd
/build
&&
tar
xzf jpegsrc.v
${
JPEG_VERSION
}
.tar.gz
&&
\
RUN
mkdir
-p
/build
&&
cd
/build
&&
\
curl
-O
https://www.hdfgroup.org/ftp/lib-external/jpeg/src/jpegsrc.v
${
JPEG_VERSION
}
.tar.gz
&&
\
tar
xzf jpegsrc.v
${
JPEG_VERSION
}
.tar.gz
&&
\
cd
jpeg-
${
JPEG_VERSION
}
&&
\
./configure
&&
make
-j4
&&
make
install
&&
\
cp
config.log /opt/config.log-jpeg-
${
JPEG_VERSION
}
cp
config.log /opt/config.log-jpeg-
${
JPEG_VERSION
}
&&
\
rm
-rf
/build
## add szip
#RUN cd /build && tar zxf szip-${SZIP_VERSION}.tar.gz && \
#RUN mkdir -p /build && cd /build && curl -O https://www.hdfgroup.org/ftp/lib-external/szip/${SZIP_VERSION}/src/szip-${SZIP_VERSION}.tar.gz && \
# tar zxf szip-${SZIP_VERSION}.tar.gz && \
# cd szip-${SZIP_VERSION} && \
# ./configure --prefix="/usr" --disable-shared --with-pic && make -j4 && make install && \
# cp config.log /config/config.log-szip-${SZIP_VERSION}
# FIXME: HDF4 currently claims it cannot build shared libraries for fortran? wtf?
# https://lists.hdfgroup.org/pipermail/hdf-forum_lists.hdfgroup.org/2016-January/009163.html
# enable-shared => disable-shared everywhere for now since we're most likely building static binaries anyways
# cp config.log /config/config.log-szip-${SZIP_VERSION} && \
# rm -rf /build
# add hdf4
RUN
cd
/build
&&
mkdir
-p
/opt/hdf4
&&
tar
xzf hdf-
${
HDF4_VERSION
}
.tar.gz
&&
\
RUN
mkdir
-p
/build /opt/hdf4
&&
cd
/build
&&
\
curl
-O
http://www.hdfgroup.org/ftp/HDF/releases/HDF
${
HDF4_VERSION
}
/src/hdf-
${
HDF4_VERSION
}
.tar.gz
&&
\
tar
xzf hdf-
${
HDF4_VERSION
}
.tar.gz
&&
\
cd
hdf-
${
HDF4_VERSION
}
&&
\
CFLAGS
=
"-fPIC -DHAVE_NETCDF -fno-strict-aliasing"
\
CXXFLAGS
=
"-fPIC -DHAVE_NETCDF -fno-strict-aliasing"
\
./configure
--prefix
=
"/opt/hdf4"
--disable-netcdf
--enable-fortran
&&
make
-j4
&&
make
install
&&
\
cp
config.log /opt/hdf4/config.log-hdf4-
${
HDF4_VERSION
}
cp
config.log /opt/hdf4/config.log-hdf4-
${
HDF4_VERSION
}
&&
\
rm
-rf
/build
# add hdf5
# note - hdf5 post-1.8.11 now includes -ldl as a dependency
# http://hdf-forum.184993.n3.nabble.com/Errors-compiling-against-Static-build-HDF5-1-8-11-Need-for-ldl-added-to-linker-arguments-td4026300.html
RUN
cd
/build
&&
mkdir
-p
/opt/hdf5
&&
tar
xzf hdf5-
${
HDF5_VERSION
}
.tar.gz
&&
\
RUN
mkdir
-p
/build /opt/hdf5
&&
cd
/build
&&
\
curl
-O
https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-
${
HDF5_VERSION
}
/src/hdf5-
${
HDF5_VERSION
}
.tar.gz
&&
\
tar
xzf hdf5-
${
HDF5_VERSION
}
.tar.gz
&&
\
cd
hdf5-
${
HDF5_VERSION
}
&&
\
./configure
--prefix
=
"/opt/hdf5"
--with-pic
--with-zlib
=
"/opt/zlib"
--enable-cxx
--enable-fortran
--enable-fortran2003
--with-pthread
&&
make
-j4
&&
make
install
&&
\
cp
config.log /opt/hdf5/config.log-hdf5-
${
HDF5_VERSION
}
cp
config.log /opt/hdf5/config.log-hdf5-
${
HDF5_VERSION
}
&&
\
rm
-rf
/build
# add netcdf-c
RUN
cd
/build
&&
mkdir
-p
/opt/netcdf4
&&
tar
xzf netcdf-
${
NC4C_VERSION
}
.tar.gz
&&
\
RUN
mkdir
-p
/build /opt/netcdf4
&&
cd
/build
&&
\
curl
-O
ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-
${
NC4C_VERSION
}
.tar.gz
&&
\
tar
xzf netcdf-
${
NC4C_VERSION
}
.tar.gz
&&
\
cd
netcdf-
${
NC4C_VERSION
}
&&
\
CPPFLAGS
=
"-I/opt/hdf4/include -I/opt/hdf5/include"
\
LDFLAGS
=
"-L/opt/hdf4/lib -L/opt/hdf5/lib"
\
LD_LIBRARY_PATH
=
"/opt/zlib/lib:/opt/jpeg/lib:/opt/hdf4/lib:/opt/hdf5/lib"
\
LIBS
=
"-ldf -lhdf5_hl -lhdf5 -ljpeg -lm -lz"
\
./configure
--prefix
=
"/opt/netcdf4"
--enable-hdf4
--disable-dap
--with-pic
&&
make
-j4
&&
make
install
&&
\
cp
config.log /opt/netcdf4/config.log-netcdf-
${
NC4C_VERSION
}
cp
config.log /opt/netcdf4/config.log-netcdf-
${
NC4C_VERSION
}
&&
\
rm
-rf
/build
# add netcdf-fortran
# compiling against this requires -lnetcdff (note the extra f)
RUN
cd
/build
&&
mkdir
-p
/opt/netcdf4
&&
tar
xzf netcdf-fortran-
${
NC4F_VERSION
}
.tar.gz
&&
\
RUN
mkdir
-p
/build /opt/netcdf4
&&
cd
/build
&&
\
curl
-O
ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-fortran-
${
NC4F_VERSION
}
.tar.gz
&&
\
tar
xzf netcdf-fortran-
${
NC4F_VERSION
}
.tar.gz
&&
\
cd
netcdf-fortran-
${
NC4F_VERSION
}
&&
\
CPPFLAGS
=
"-I/opt/hdf4/include -I/opt/hdf5/include -I/opt/netcdf4/include"
\
LDFLAGS
=
"-L/opt/hdf4/lib -L/opt/hdf5/lib -L/opt/netcdf4/lib"
\
LD_LIBRARY_PATH
=
"/opt/hdf4/lib:/opt/hdf5/lib:/opt/netcdf4/lib"
\
LIBS
=
"-lnetcdf -ldf -lhdf5_hl -lhdf5 -ljpeg -lm -lz"
\
./configure
--prefix
=
"/opt/netcdf4"
--disable-dap
--with-pic
&&
make
-j4
&&
make
install
&&
\
cp
config.log /opt/netcdf4/config.log-netcdff-
${
NC4F_VERSION
}
cp
config.log /opt/netcdf4/config.log-netcdff-
${
NC4F_VERSION
}
&&
\
rm
-rf
/build
# throw in some minor shell niceties
RUN
echo
'alias ls="ls --color=auto"'
>>
~/.bashrc
&&
\
...
...
@@ -102,6 +109,3 @@ RUN echo "export HDF4=/opt/hdf4" >> ~/.bashrc && \
echo
"export LD_LIBRARY_PATH=
${
HDF4
}
/lib:
${
HDF5
}
/lib:
${
NETCDF
}
/lib:
${
LD_LIBRARY_PATH
}
"
>>
~/.bashrc
&&
\
echo
""
>>
~/.bashrc
# remove all the build cruft
RUN
rm
-rf
/build
RUN
rm
-rf
/usr/man
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