fixed links to config file in reports and formatting of filter descriptions; added check for whether user requested config file is available that will end execution with a warning if it is not

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added correction to save the path to the doc page so it can be used when generating the variable report; also fixed bug with float values being overridden when data types were changed

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fixed pass/fail calculation logic; added assert to simplify error when fill value not defined during colocation; general clean up of code and comments

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stubbing some classes into stats for later; added r-squared correlation statistic;  added ability to test pass/fail on the r-squared correlation; refactored the pass/fail calculation code

git-svn-id: https://svn.ssec.wisc.edu/repos/glance/trunk@114 8a9318a1-56ba-4d59-b755-99d26321be01

integrating diff code into the data objects more seamlessly; some minor comment editing in the collocation module

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adding basic data objects and making difference analysis their responsibility; minimal integration to keep them working with the rest of the code

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Unsigned ints are upcast to higher precision signed ints before computing diff, to avoid possible overflow

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added method to calculate original indexes in non flattened case based on flat index and original shape; altered report to show subgroupings and image generation to put bin/tuple images into subgroupings by bin; fixed case number on the line plots

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corrected magnitude direction to UV vector formula; added code to support bin tuple visualizations for complex data (first draft); stubbed in methods for attribute modification and variable creation in file types other than .nc

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corrected loading of h5 missing values; fixed info variable selection crash; invalid pts much more accurately detected and ignored during colocation; set up to plot vector data using config file settings; fixed remote file access for colocation copies

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added code to support data colocation and creation of modified files including colocated data; added support for a filter based on another variable data set (for example filtering winds on QI); quite a bit of refactoring to clean up code and handle longitude/latitude edge cases

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added foundation work for vector data plotting (using quiver); added more work on ipopp visualization; major refactoring of plotting code to simplify and reorganize

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updated h5 loading to figure out variable names in files correctly; also corrected issue with fill value for diffing data that is integer typed

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various refactoring to handle data without lon/lat; new image making methods for 2D data just shown as an image (not mapped) and for line plots; changed plotting module to use a pseudo-factory pattern for generating correct plot set; created new filter to make ipopp data into an image; created new filter to collapse multi-dimensional data

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added link to configuration file in report, corrected bug related to alternative variable name and name existance checking in files, reorganized report generation for clarity and to slim down memory usage, moved to having images named in lists so the report templates can be stupid, changed naming scheme for thumbnail pictures to support stupid report templates

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added features to plot figures individual; to control threading for memory clean up; new filter to allow limit data to bounds; > 1,000,000 trouble pts now plot as a contour; new glance library functions

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moved variable reports and images into subdirectories using their display names so that virtual data sets using the same variable do not stomp each other's image names

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adding testing code to use fork to control memory use bloat when plotting; changed to getting type of scaled data from loaded offset/scale

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correcting interaction between shouldIncludeImages in settings and the new plot only on fail feature

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added ability to do custom formatting per call and increased precision on the two percentages in the main report that are used for the tolerance tests

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