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Commit 80145c98 authored by Coda Phillips's avatar Coda Phillips
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Finish up the interpreter

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interpret_qc.py
+ 52
− 4
View file @ 80145c98
...@@ -2,21 +2,64 @@ import netCDF4 ...@@ -2,21 +2,64 @@ import netCDF4
import pandas as pd import pandas as pd
import numpy as np import numpy as np
import matplotlib.pyplot as plt import matplotlib.pyplot as plt
import mpld3
from aeri_tools.io.dmv.housekeeping import get_all_housekeeping from aeri_tools.io.dmv.housekeeping import get_all_housekeeping
from main import files_to_update from main import files_to_update
from glob import glob from glob import glob
import os import os
import flask
from flask import render_template
from datetime import datetime
app = flask.Flask(__name__)
global_ftp_dir = None
@app.route('/')
def index():
ae_dirs = glob(os.path.join(global_ftp_dir, 'AE*/*.qc'))
ae_dirs = [a.lstrip('/') for a in ae_dirs]
return flask.render_template('index.html', ae_dirs=ae_dirs)
@app.route('/qc/<path:qc_path>')
def qc_day(qc_path):
qc_path = '/'+qc_path
cxs_path = qc_path.replace('.qc','B1.CXS')
sum_path = qc_path.replace('.qc','.SUM')
cxs = get_all_housekeeping(cxs_path)
frame = cxs.combine_first(get_all_housekeeping(sum_path))
frame = frame.combine_first(get_qc_frame(qc_path))
plots = []
for qc_variable in ([
'ABBapexTemp',
'ABBtopTemp',
'ABBbottomTemp',
'HBBapexTemp',
'HBBtopTemp',
'HBBbottomTemp',
'calibrationAmbientTemp']):
plot = plot_variable_qc(frame, qc_variable)
if plot is not None:
plots.append(plot)
return flask.render_template('qc.html', qc_path=qc_path, plots=plots)
def save_plot(filename): def save_plot(filename):
print('saving {}'.format(filename)) print('saving {}'.format(filename))
plt.savefig(filename, transparent=True) plt.savefig(filename, transparent=True)
def plot_variable_qc(frame, loc, filename): def plot_variable_qc(frame, loc, filename=None):
qc_loc = 'qc_' + loc qc_loc = 'qc_' + loc
if sum(frame[qc_loc]) > 0: if sum(frame[qc_loc]) > 0:
plt.figure() fig = plt.figure(figsize=(50,5))
plot_outliers(frame, frame[qc_loc] == 0, loc) plot_outliers(frame, frame[qc_loc] == 0, loc)
save_plot(filename) if filename is not None:
save_plot(filename)
else:
return mpld3.fig_to_html(fig)
def plot_outliers(frame, qc_mask, loc): def plot_outliers(frame, qc_mask, loc):
if (~qc_mask).any(): if (~qc_mask).any():
...@@ -60,8 +103,13 @@ if __name__ == '__main__': ...@@ -60,8 +103,13 @@ if __name__ == '__main__':
import argparse import argparse
parser = argparse.ArgumentParser() parser = argparse.ArgumentParser()
parser.add_argument('ftp') parser.add_argument('ftp')
parser.add_argument('--serve', action='store_true')
args = parser.parse_args() args = parser.parse_args()
generate_all_plots(args.ftp) if not args.serve:
generate_all_plots(args.ftp)
else:
global_ftp_dir = args.ftp
app.run(debug=True)
templates/index.html 0 → 100644
+ 12
− 0
View file @ 80145c98
<!DOCTYPE html>
<html>
<head>
</head>
<body>
<ul>
{% for d in ae_dirs %}
<a href="/qc/{{d}}"><li>/{{d}}</li></a>
{% endfor %}
</ul>
</body
</html>
templates/qc.html 0 → 100644
+ 11
− 0
View file @ 80145c98
<!DOCTYPE html>
<html>
<head>
</head>
<body>
<h1>{{qc_path}}</h1>
{% for plot in plots %}
{{plot|safe}}
{% endfor %}
</body
</html>
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