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Commit 1dcc8083 authored by tomrink's avatar tomrink
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simplify

parent f755a22c
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......@@ -32,7 +32,7 @@ def run_all(directory, out_directory):
cnt = 10
total_num_train_samples = 0
total_num_test_samples = 0
total_num_valid_samples = 0
for p in os.scandir(directory):
if not p.is_dir():
......@@ -105,8 +105,9 @@ def run_all(directory, out_directory):
[data_valid_tiles.append(data_tiles[k]) for k in range(n_vld)]
[data_train_tiles.append(data_tiles[k]) for k in range(n_vld, num)]
f_cnt += 1
if f_cnt == 10:
cnt += 1
f_cnt = 0
#label_valid = np.stack(label_valid_tiles)
#label_train = np.stack(label_train_tiles)
......@@ -128,40 +129,11 @@ def run_all(directory, out_directory):
print(' file # done: ', cnt)
print('num_train_samples, num_valid_samples: ', num_train_samples, num_valid_samples)
total_num_train_samples += num_train_samples
total_num_test_samples += num_valid_samples
f_cnt = 0
else:
f_cnt += 1
# if len(label_train_tiles) == 0 or len(data_train_tiles) == 0:
# continue
# if len(label_train_tiles) != len(data_train_tiles):
# print('weirdness')
# continue
total_num_valid_samples += num_valid_samples
if len(data_train_tiles) == 0:
continue
#label_valid = np.stack(label_valid_tiles)
#label_train = np.stack(label_train_tiles)
data_valid = np.stack(data_valid_tiles)
data_train = np.stack(data_train_tiles)
cnt += 1
np.save(out_directory+'data_train_' + str(cnt), data_train)
np.save(out_directory+'data_valid_' + str(cnt), data_valid)
#np.save(out_directory+'label_train_' + str(cnt), label_train)
#np.save(out_directory+'label_valid_' + str(cnt), label_valid)
num_train_samples = data_train.shape[0]
num_valid_samples = data_valid.shape[0]
print('num_train_samples, num_valid_samples: ', num_train_samples, num_valid_samples)
total_num_train_samples += num_train_samples
total_num_test_samples += num_valid_samples
cnt += 1
print('total_num_train_samples, total_num_valid_samples: ', num_train_samples, num_valid_samples)
print('total_num_train_samples, total_num_valid_samples: ', total_num_train_samples, total_num_valid_samples)
def run(data_h5f, label_h5f, data_tiles, label_tiles, mod_tile_width=64, kernel_size=9):
......
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