Added pandas to requirements and fixed few errors

setup.py now requires the pandas module
Fixed bug where some files were missing a data entry
Fixed bug where autoRun.bash pointed to wrong python file and python directory

aosstower/level_a0/autoRun.bash

-!/usr/bin/env bash
-PYENV=/home/kgao/env/
-SCRIPT=/home/kgao/Code/finished/Aoss_Tower_a1_Conversion/convertFromASCIIToNETCDF/autoRun.py
+#!/usr/bin/env bash
+PYENV=~/anaconda3/envs/env
+SCRIPT=/home/kgao/Code/curr_projects/ncGenerate/AossTower/aosstower/level_a0/autoRun.py
 (
     flock -x -n 200 || exit $?
     $PYENV/bin/python $SCRIPT

aosstower/level_a0/bundle.py

@@ -6,6 +6,26 @@ import time
 from netCDF4 import Dataset
 import os
 
+def writeBack(frame, filename, cur_dt):
+    #get start
+    startString = str(frame.index[0])
+    startObj = dt.strptime(startString.split(" ")[0], '%Y-%m-%d')
+    createDirectory(startObj)
+
+    #get end
+    endObj = startObj.replace(hour=23, minute=59, second=59, microsecond=59)
+
+    #input file
+    inputFiles = []
+    inputFiles.append(filename)
+    inputFiles.append(createFilename(cur_dt - delta(days=1)))
+
+    #output filename
+    outputFilename = 'aoss_tower.' + startString.split(" ")[0] + '.nc'
+
+    #create file
+    createGiantNetCDF(startObj, endObj, inputFiles, outputFilename, True, None, False)
+
 def createDirectory(stamp):
     if os.path.exists("/mnt/inst-data/regen_netcdf/aoss/tower/" + stamp.strftime('%Y/%m')):
         os.chdir("/mnt/inst-data/regen_netcdf/aoss/tower/" + stamp.strftime('%Y/%m'))
@@ -79,26 +99,18 @@ def create_files(start_date, end_date):
 
                 #get second frame
                 frame = DFList[1]
-                
-                #get start
-                startString = str(frame.index[0])
-                startObj = dt.strptime(startString.split(" ")[0], '%Y-%m-%d')
-                createDirectory(startObj)
-       
-                #get end
-                endObj = startObj.replace(hour=23, minute=59, second=59, microsecond=59)
-
-                #input file
-                inputFiles = []
-                inputFiles.append(filename)
-                inputFiles.append(createFilename(cur_dt - delta(days=1)))
-
-                #output filename
-                outputFilename = 'aoss_tower.' + startString.split(" ")[0] + '.nc' 
- 
-                #create file
-                createGiantNetCDF(startObj, endObj, inputFiles, outputFilename, True, None, False)
 
+                writeBack(frame, filename, cur_dt)
+        
+            else:
+                frame = DFList[1]
+                createNCFile(frame, filename)
+
+                #get second frame
+                frame = DFList[0]
+
+                writeBack(frame, filename, cur_dt)
+                
         else:
             print(len(DFList))