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group inputs by minute and process accordingly

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Merged Nick Bearson requested to merge 5-handle-fewer-than-nominal-number-of-inputs-differently into master May 12, 2022
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rearranges a lot of our input file handling, should be more consistent and also allow us to potentially add multiprocessing (when provided multiple minutes) in the future if desired.

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Source branch: 5-handle-fewer-than-nominal-number-of-inputs-differently