where

distro/scripts/adl_cots.sh

@@ -66,6 +66,7 @@ export LD_LIBRARY_PATH=${USER_COTS_PATH}/lib64:${USER_COTS_PATH}/lib:${LD_LIBRAR
 export LD_RUN_PATH=${USER_COTS_PATH}/lib64:${USER_COTS_PATH}/lib:${LD_RUN_PATH}
 export PATH=${USER_COTS_PATH}/bin:$PATH
 export LDFLAGS="-L${USER_COTS_PATH}/lib -L${USER_COTS_PATH}/lib64 "
+
 install_the_source (){
     echo ${FUNCNAME[0]}
     # This will download and unpack the requested COT.  If the cot is already present it will not be downloaded.
@@ -470,6 +471,7 @@ mk_hl_region()
     tar_name=hdf5_HL_REGION-1.1.5.tar.gz  && \
     install_the_source $tar_name   && \
     cd ${BUILD}/hdf5_HL*  && \
+    export CCFLAGS="${CFLAGS} ${LDFLAGS}"
     export HDF5_INSTALL_DIR=${USER_COTS_PATH} && \
     linc=`pwd`  && \
     make clean  && \
@@ -486,7 +488,7 @@ mk_nagg(){
     install_the_source ${tar_name}  && \
     cd nagg-1.6.2  && \
     patch -p1 <  ${COTS_HOME}/scripts/revised_nagg.patch   && \
-    ./configure  --prefix=${USER_COTS_PATH} --exec-prefix="${USER_COTS_PATH}" --with-hlregion="${USER_COTS_PATH}/lib" CFLAGS="${CFLAGS}" CPPFLAGS="${CPPFLAGS}" LDFLAGS="${LDFLAGS}"  && \
+    ./configure  --prefix=${USER_COTS_PATH} --exec-prefix="${USER_COTS_PATH}" --with-hlregion="${USER_COTS_PATH}/lib" CFLAGS="${CFLAGS}  -I${USER_COTS_PATH}/include " CPPFLAGS="${CPPFLAGS} -I${USER_COTS_PATH}/include " LDFLAGS="${LDFLAGS}"  && \
     make   && \
     make install   && \
     echo "${FUNCNAME[0]} finished" && \