update hdf5 and netcdf

Dockerfile

-FROM centos_gcc:7
+FROM gitlab.ssec.wisc.edu:5555/cphillips/centos6_gcc_docker
 
 WORKDIR /root/
 COPY make_all.sh make_all.sh

build.sh

 #!/bin/bash
-docker build -t netcdf_hdf:7 .
+#docker build -t netcdf_hdf:7 .
+docker build -t gitlab.ssec.wisc.edu:5555/cphillips/netcdf_hdf_docker .

download_src.sh

 #!/bin/bash
 set -ex
 wget https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.13/src/hdf-4.2.13.tar.bz2
-wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.20/src/hdf5-1.8.20.tar.bz2
-wget https://www.unidata.ucar.edu/downloads/netcdf/ftp/netcdf-c-4.7.1.tar.gz
-wget https://www.unidata.ucar.edu/downloads/netcdf/ftp/netcdf-fortran-4.5.1.tar.gz
+wget https://hdf-wordpress-1.s3.amazonaws.com/wp-content/uploads/manual/HDF5/HDF5_1_12_3/src/hdf5-1.12.3.tar.gz
+wget https://downloads.unidata.ucar.edu/netcdf-c/4.9.2/netcdf-c-4.9.2.tar.gz
+wget https://downloads.unidata.ucar.edu/netcdf-fortran/4.6.1/netcdf-fortran-4.6.1.tar.gz
 
 

make_all.sh

 #!/bin/bash
+set -ex
+
 yum install -y libjpeg-turbo-static.x86_64 zlib-static.x86_64 subversion glibc-static wget bison flex
 ./download_src.sh
 
 tar xf hdf-4.2.13.tar.bz2
-tar xf hdf5-1.8.20.tar.bz2
-tar xf netcdf-c-4.7.1.tar.gz 
-tar xf netcdf-fortran-4.5.1.tar.gz
+tar xf hdf5-1.12.3.tar.gz
+tar xf netcdf-c-4.9.2.tar.gz 
+tar xf netcdf-fortran-4.6.1.tar.gz
 
 cd /root/hdf-4.2.13
 export PREFIX=/root/hdf4
@@ -13,19 +15,19 @@ export PREFIX=/root/hdf4
 make
 make install
 
-cd /root/hdf5-1.8.20/
+cd /root/hdf5-1.12.3/
 export PREFIX=/root/hdf5
 ./configure --enable-static --prefix=/root/hdf5/ --enable-fortran2003  --enable-fortran
 make 
 make install
 
-cd /root/netcdf-c-4.7.1
+cd /root/netcdf-c-4.9.2
 export PREFIX=/root/netcdf
-CFLAGS='-I/root/hdf5/include/' LDFLAGS='-L/root/hdf5/lib/' ./configure --prefix=/root/netcdf/ --enable-static --disable-dap
+CFLAGS='-I/root/hdf5/include/' LDFLAGS='-L/root/hdf5/lib/' ./configure --prefix=/root/netcdf/ --enable-static --disable-dap --disable-libxml2 --disable-byterange
 make
 make install
 
-cd /root/netcdf-fortran-4.5.1
+cd /root/netcdf-fortran-4.6.1
 LD_LIBRARY_PATH=/root/hdf5/lib/:/root/netcdf/lib/:$LD_LIBRARY_PATH CFLAGS='-I/root/hdf5/include/ -I/root/netcdf/include/' LDFLAGS='-L/root/hdf5/lib/ -L/root/netcdf/lib/' ./configure --prefix=/root/netcdf/ --enable-static
 make 
 make install
@@ -36,5 +38,5 @@ mkdir /root/lib/
 ln -s /root/hdf4 /root/lib/hdf4_gcc 
 ln -s /root/hdf5 /root/lib/hdf5_gcc 
 ln -s /root/netcdf /root/lib/netcdf4_gcc
-rm -rf hdf-4.2.13 hdf-4.2.13.tar.bz2 hdf5-1.8.20 install_clavrx_trunk_gfortran.sh netcdf-c-4.7.1 netcdf-c-4.7.1.tar.gz netcdf-fortran-4.5.1 netcdf-fortran-4.5.1.tar.gz hdf5-1.8.20.tar.bz2 anaconda-ks.cfg  install.log  install.log.syslog
+rm -rf hdf-4.2.13 hdf-4.2.13.tar.bz2 hdf5-1.12.3 install_clavrx_trunk_gfortran.sh netcdf-c-4.9.2 netcdf-c-4.9.2.tar.gz netcdf-fortran-4.6.1 netcdf-fortran-4.6.1.tar.gz hdf5-1.12.3.tar.gz anaconda-ks.cfg  install.log  install.log.syslog
 yum remove -y wget subversion

run.sh

-docker run -it --rm netcdf_hdf /bin/bash -l
+docker run -it --rm gitlab.ssec.wisc.edu:5555/cphillips/netcdf_hdf_docker /bin/bash -l