From c867f6e795b0b4146c0e241dd6d697926147a301 Mon Sep 17 00:00:00 2001
From: tomrink <rink@ssec.wisc.edu>
Date: Tue, 6 Apr 2021 12:16:00 -0500
Subject: [PATCH] snapshot...
---
modules/icing/pirep_goes.py | 98 ++++++++++++++++++++++++++++++++++---
1 file changed, 90 insertions(+), 8 deletions(-)
diff --git a/modules/icing/pirep_goes.py b/modules/icing/pirep_goes.py
index 204c47fe..4c63fe76 100644
--- a/modules/icing/pirep_goes.py
+++ b/modules/icing/pirep_goes.py
@@ -800,6 +800,12 @@ def apply_qc_icing_pireps(icing_alt, cld_top_hgt, cld_phase, cld_opd, cld_mask,
def fov_extract(outfile='/Users/tomrink/fovs_out.h5'):
ice_times = []
icing_int_s = []
+ ice_lons = []
+ ice_lats = []
+
+ no_ice_times = []
+ no_ice_lons = []
+ no_ice_lats = []
h5_s_icing = []
h5_s_no_icing = []
@@ -819,6 +825,8 @@ def fov_extract(outfile='/Users/tomrink/fovs_out.h5'):
num_obs = len(times)
icing_int = f['icing_intensity'][:]
+ lons = f['longitude'][:]
+ lats = f['latitude'][:]
cld_mask = f['cloud_mask'][:, 10:30, 10:30]
cld_mask = cld_mask.reshape((num_obs, -1))
@@ -843,8 +851,10 @@ def fov_extract(outfile='/Users/tomrink/fovs_out.h5'):
dat = f[ds_name][i, 10:30, 10:30].flatten()
icing_data_dct[ds_name].append(dat[k_idxs])
- ice_flags = np.full(len(k_idxs), icing_int[i])
- icing_int_s.append(ice_flags)
+ icing_int_s.append(np.full(len(k_idxs), icing_int[i]))
+ ice_times.append(np.full(len(k_idxs), times[i]))
+ ice_lons.append(np.full(len(k_idxs), lons[i]))
+ ice_lats.append(np.full(len(k_idxs), lats[i]))
print(fname)
@@ -853,6 +863,9 @@ def fov_extract(outfile='/Users/tomrink/fovs_out.h5'):
icing_data_dct[ds_name] = np.concatenate(lst)
icing_int_s = np.concatenate(icing_int_s)
+ ice_times = np.concatenate(ice_times)
+ ice_lons = np.concatenate(ice_lons)
+ ice_lats = np.concatenate(ice_lats)
num_no_ice = 0
for fidx in range(len(no_icing_files)):
@@ -862,6 +875,8 @@ def fov_extract(outfile='/Users/tomrink/fovs_out.h5'):
times = f['time']
num_obs = len(times)
+ lons = f['longitude']
+ lats = f['latitude']
cld_mask = f['cloud_mask'][:, 10:30, 10:30]
cld_mask = cld_mask.reshape((num_obs, -1))
@@ -881,6 +896,9 @@ def fov_extract(outfile='/Users/tomrink/fovs_out.h5'):
else:
k_idxs = k_idxs[0:len(k_idxs)]
num_no_ice += len(k_idxs)
+ no_ice_times.append(np.full(len(k_idxs), times[i]))
+ no_ice_lons.append(np.full(len(k_idxs), lons[i]))
+ no_ice_lats.append(np.full(len(k_idxs), lats[i]))
for ds_name in train_params_day:
dat = f[ds_name][i, 10:30, 10:30].flatten()
@@ -892,19 +910,29 @@ def fov_extract(outfile='/Users/tomrink/fovs_out.h5'):
lst = no_icing_data_dct[ds_name]
no_icing_data_dct[ds_name] = np.concatenate(lst)
no_icing_int_s = np.full(num_no_ice, -1)
-
- ds_indexes = np.arange(num_ice + num_no_ice)
- np.random.shuffle(ds_indexes)
+ no_ice_times = np.concatenate(no_ice_times)
+ no_ice_lons = np.concatenate(no_ice_lons)
+ no_ice_lats = np.concatenate(no_ice_lats)
icing_intensity = np.concatenate([icing_int_s, no_icing_int_s])
+ icing_times = np.concatenate([ice_times, no_ice_times])
+ icing_lons = np.concatenate([ice_lons, no_ice_lons])
+ icing_lats = np.concatenate([ice_lats, no_ice_lats])
data_dct = {}
for ds_name in train_params_day:
data_dct[ds_name] = np.concatenate([icing_data_dct[ds_name], no_icing_data_dct[ds_name]])
+ # apply shuffle indexes
+ ds_indexes = np.arange(num_ice + num_no_ice)
+ np.random.shuffle(ds_indexes)
+
for ds_name in train_params_day:
data_dct[ds_name] = data_dct[ds_name][ds_indexes]
icing_intensity = icing_intensity[ds_indexes]
+ icing_times = icing_times[ds_indexes]
+ icing_lons = icing_lons[ds_indexes]
+ icing_lats = icing_lats[ds_indexes]
h5f_expl = h5py.File(a_clvr_file, 'r')
h5f_out = h5py.File(outfile, 'w')
@@ -917,6 +945,18 @@ def fov_extract(outfile='/Users/tomrink/fovs_out.h5'):
icing_int_ds = h5f_out.create_dataset('icing_intensity', data=icing_intensity, dtype='i4')
icing_int_ds.attrs.create('long_name', data='From PIREP. -1:No Icing, 1:Trace, 2:Light, 3:Light Moderate, 4:Moderate, 5:Moderate Severe, 6:Severe')
+ time_ds = h5f_out.create_dataset('time', data=icing_times, dtype='f4')
+ time_ds.attrs.create('units', data='seconds since 1970-1-1 00:00:00')
+ time_ds.attrs.create('long_name', data='PIREP time')
+
+ lon_ds = h5f_out.create_dataset('longitude', data=icing_lons, dtype='f4')
+ lon_ds.attrs.create('units', data='degrees_east')
+ lon_ds.attrs.create('long_name', data='PIREP longitude')
+
+ lat_ds = h5f_out.create_dataset('latitude', data=icing_lats, dtype='f4')
+ lat_ds.attrs.create('units', data='degrees_north')
+ lat_ds.attrs.create('long_name', data='PIREP latitude')
+
# copy relevant attributes
for ds_name in train_params_day:
h5f_ds = h5f_out[ds_name]
@@ -937,6 +977,13 @@ def fov_extract(outfile='/Users/tomrink/fovs_out.h5'):
def box_extract(outfile='/Users/tomrink/box_out.h5'):
icing_int_s = []
+ ice_time_s = []
+ no_ice_time_s = []
+ ice_lon_s = []
+ no_ice_lon_s = []
+ ice_lat_s = []
+ no_ice_lat_s = []
+
h5_s_icing = []
h5_s_no_icing = []
@@ -951,6 +998,8 @@ def box_extract(outfile='/Users/tomrink/box_out.h5'):
times = f['time'][:]
num_obs = len(times)
+ lons = f['longitude']
+ lats = f['latitude']
icing_int = f['icing_intensity'][:]
@@ -959,6 +1008,9 @@ def box_extract(outfile='/Users/tomrink/box_out.h5'):
dat = f[ds_name][i, 12:28, 12:28]
icing_data_dct[ds_name].append(dat)
icing_int_s.append(icing_int[i])
+ ice_time_s.append(times[i])
+ ice_lon_s.append(lons[i])
+ ice_lat_s.append(lats[i])
print(fname)
@@ -966,6 +1018,9 @@ def box_extract(outfile='/Users/tomrink/box_out.h5'):
lst = icing_data_dct[ds_name]
icing_data_dct[ds_name] = np.stack(lst, axis=0)
icing_int_s = np.array(icing_int_s)
+ ice_time_s = np.array(ice_time_s)
+ ice_lon_s = np.array(ice_lon_s)
+ ice_lat_s = np.array(ice_lat_s)
num_ice = icing_int_s.shape[0]
num_no_ice = 0
@@ -976,12 +1031,17 @@ def box_extract(outfile='/Users/tomrink/box_out.h5'):
times = f['time']
num_obs = len(times)
+ lons = f['longitude']
+ lats = f['latitude']
for i in range(num_obs):
for ds_name in train_params_day:
dat = f[ds_name][i, 12:28, 12:28]
no_icing_data_dct[ds_name].append(dat)
num_no_ice += 1
+ no_ice_time_s.append(times[i])
+ no_ice_lon_s.append(lons[i])
+ no_ice_lat_s.append(lats[i])
print(fname)
@@ -989,19 +1049,29 @@ def box_extract(outfile='/Users/tomrink/box_out.h5'):
lst = no_icing_data_dct[ds_name]
no_icing_data_dct[ds_name] = np.stack(lst, axis=0)
no_icing_int_s = np.full(num_no_ice, -1)
-
- ds_indexes = np.arange(num_ice + num_no_ice)
- np.random.shuffle(ds_indexes)
+ no_ice_time_s = np.array(no_ice_time_s)
+ no_ice_lon_s = np.array(no_ice_lon_s)
+ no_ice_lat_s = np.array(no_ice_lat_s)
icing_intensity = np.concatenate([icing_int_s, no_icing_int_s])
+ icing_times = np.concatenate([ice_time_s, no_ice_time_s])
+ icing_lons = np.concatenate([ice_lon_s, no_ice_lon_s])
+ icing_lats = np.concatenate([ice_lat_s, no_ice_lat_s])
data_dct = {}
for ds_name in train_params_day:
data_dct[ds_name] = np.concatenate([icing_data_dct[ds_name], no_icing_data_dct[ds_name]])
+ # Do shuffle
+ ds_indexes = np.arange(num_ice + num_no_ice)
+ np.random.shuffle(ds_indexes)
+
for ds_name in train_params_day:
data_dct[ds_name] = data_dct[ds_name][ds_indexes]
icing_intensity = icing_intensity[ds_indexes]
+ icing_times = icing_times[ds_indexes]
+ icing_lons = icing_lons[ds_indexes]
+ icing_lats = icing_lats[ds_indexes]
h5f_expl = h5py.File(a_clvr_file, 'r')
h5f_out = h5py.File(outfile, 'w')
@@ -1014,6 +1084,18 @@ def box_extract(outfile='/Users/tomrink/box_out.h5'):
icing_int_ds = h5f_out.create_dataset('icing_intensity', data=icing_intensity, dtype='i4')
icing_int_ds.attrs.create('long_name', data='From PIREP. -1:No Icing, 1:Trace, 2:Light, 3:Light Moderate, 4:Moderate, 5:Moderate Severe, 6:Severe')
+ time_ds = h5f_out.create_dataset('time', data=icing_times, dtype='f4')
+ time_ds.attrs.create('units', data='seconds since 1970-1-1 00:00:00')
+ time_ds.attrs.create('long_name', data='PIREP time')
+
+ lon_ds = h5f_out.create_dataset('longitude', data=icing_lons, dtype='f4')
+ lon_ds.attrs.create('units', data='degrees_east')
+ lon_ds.attrs.create('long_name', data='PIREP longitude')
+
+ lat_ds = h5f_out.create_dataset('latitude', data=icing_lats, dtype='f4')
+ lat_ds.attrs.create('units', data='degrees_north')
+ lat_ds.attrs.create('long_name', data='PIREP latitude')
+
# copy relevant attributes
for ds_name in train_params_day:
h5f_ds = h5f_out[ds_name]
--
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