Update from aeri_docker 64bit

aeri_qc/main.py

@@ -29,7 +29,7 @@ def save_quality(frame, qc_path, checklist):
     Save the DataFrame (frame) to a netCDF at (qc_path)
     """
     # First select only rows corresponding to records from the sum file
-    frame = frame.ix[pd.notnull(frame.sum_index)].set_index('sum_index').sort_index()
+    frame = frame.loc[pd.notnull(frame.sum_index)].set_index('sum_index').sort_index()
 
     # Define the netcdf
     handle, temp = mkstemp()
@@ -185,7 +185,7 @@ def read_frame(cxs_file, sum_file):
     # Fill in any missing scenesMirrorPositions
     cxs['sceneMirrorPosition'] = fill_na_sceneMirrorPosition(cxs.sceneMirrorPosition)
     # Find all non-calibration views
-    non_cal_records = cxs.ix[~cxs.sceneMirrorPosition.isin([ord('H'), ord('A')])].copy()
+    non_cal_records = cxs.loc[~cxs.sceneMirrorPosition.isin([ord('H'), ord('A')])].copy()
     non_cal_records.reset_index(inplace=True)
     non_cal_records.index.name = 'sum_index'
 
@@ -197,7 +197,7 @@ def read_frame(cxs_file, sum_file):
 
     # Combine extra data from SUM into CXS
     # also non_cal_records may have a different number of records than the sum, so limit by the sum
-    non_cal_records = non_cal_records.combine_first(sum_).ix[sum_.index]
+    non_cal_records = non_cal_records.combine_first(sum_).loc[sum_.index]
     hk = cxs.combine_first(non_cal_records.reset_index().set_index('cxs_index')).reset_index()
     with warnings.catch_warnings():
         warnings.simplefilter('ignore')

aeri_qc/state_checks.py

@@ -45,7 +45,7 @@ def hbb_stable_check(frame, parameters):
     Check that the HBB temperature does not change faster than 0.002 K/s
     """
     # convert changes in datetime from nanoseconds to seconds
-    interval_seconds = frame['datetime'].diff().astype(np.int64) / 1e9
+    interval_seconds = frame['datetime'].diff().dropna().astype(np.int64) / 1e9
     # calculate change in temp/seconds
     hbbb_diff = frame['HBBbottomTemp'].diff() / interval_seconds
     hbba_diff = frame['HBBapexTemp'].diff() / interval_seconds

plotting/quick_vis.py

+#!/usr/bin/env python3
 import argparse
 import os
 import time

run_aeri_qc.py

+#!/usr/bin/env python3
 import numpy as np
 
 np.seterr(all='raise')