diff --git a/aeri_qc/all_checks.py b/aeri_qc/all_checks.py
index eca465f95afff019a2c059a592dc9dcc176e221c..a3606c8ad07ef451be9f3b43b91e792756b4639a 100644
--- a/aeri_qc/all_checks.py
+++ b/aeri_qc/all_checks.py
@@ -110,14 +110,14 @@ class Checklist(object):
 checklist = Checklist()
 
 # then register all the checks using circular import like flask
-import electronic_checks
-import global_checks
-import radiometric_checks 
-import scene_checks 
-import state_checks 
-import thermal_checks 
-import bomem_file 
-import igm_checks 
+import aeri_qc.electronic_checks
+import aeri_qc.global_checks
+import aeri_qc.radiometric_checks 
+import aeri_qc.scene_checks 
+import aeri_qc.state_checks 
+import aeri_qc.thermal_checks 
+import aeri_qc.bomem_file 
+import aeri_qc.igm_checks 
 
 every_check_so_far = list({check.name for check in checklist.checks})
 
diff --git a/aeri_qc/electronic_checks.py b/aeri_qc/electronic_checks.py
index 22e7a1721ba0a316e0210b559a27a112036448b9..5a12014b25bddc742155365476bbc3ee3f7bded1 100644
--- a/aeri_qc/electronic_checks.py
+++ b/aeri_qc/electronic_checks.py
@@ -1,7 +1,7 @@
 import numpy as np
 import pandas as pd
 import itertools
-from all_checks import checklist
+from aeri_qc.all_checks import checklist
 
 ######### CHECKS ###########
 @checklist.add_check(depends=['datetime','HBBapexTemp','HBBbottomTemp','HBBtopTemp' ], affects_calibration=True, hides=['missing_data_flag_check'], description='outlier in HBB temperature discovered')
diff --git a/aeri_qc/global_checks.py b/aeri_qc/global_checks.py
index c57348fd75fc4e24409b97198a24cdafb9fe5e4e..bb6b7a04dcc73cb1fac31a43f67a90d1c0cf1563 100644
--- a/aeri_qc/global_checks.py
+++ b/aeri_qc/global_checks.py
@@ -1,6 +1,6 @@
 import numpy as np
 import pandas as pd
-from all_checks import checklist
+from aeri_qc.all_checks import checklist
 
 @checklist.add_check(depends=['missingDataFlag'], affects_calibration=True, description='record is missing')
 def missing_data_flag_check(frame, parameters):
diff --git a/aeri_qc/main.py b/aeri_qc/main.py
index 9144bf35bd24f248720c4cbb6061eec9f8bf2dd8..e140b13f5b114329df3ab3ade2cf7fd9b9a4035b 100644
--- a/aeri_qc/main.py
+++ b/aeri_qc/main.py
@@ -11,9 +11,9 @@ from io import BytesIO
 from tempfile import mkstemp
 from shutil import move
 from datetime import datetime
-from igm_checks import spike_check
+from aeri_qc.igm_checks import spike_check
 
-def save_quality(frame, qc_path):
+def save_quality(frame, qc_path, checklist):
     """
     Save the DataFrame (frame) to a netCDF at (qc_path)
     """
@@ -179,7 +179,7 @@ def update_all(ftp_dir, sci_dir, checklist, parameters=None):
         # Perform qc on housekeeping frame
         frame = check_frame(frame, parameters, checklist)
 
-        save_quality(frame, qc_file)
+        save_quality(frame, qc_file, checklist)
 
 def files_to_update(cxs_files, update_only=True):
     """
@@ -207,19 +207,3 @@ def files_to_update(cxs_files, update_only=True):
                 # if qc doesn't exist, generate
                 yield (possible_qc, cxs_file, sum_file)
 
-if __name__ == '__main__':
-    import argparse
-    import os
-    parser = argparse.ArgumentParser()
-    parser.add_argument('ftp')
-    if 'nt' in os.name:
-        default_sci = 'C:\\'
-    else:
-        default_sci = '/cygdrive/c/'
-    parser.add_argument('sci', default=None, nargs='?')
-
-    args = parser.parse_args()
-
-    from all_checks import checklist
-
-    update_all(args.ftp, args.sci, checklist)
diff --git a/aeri_qc/radiometric_checks.py b/aeri_qc/radiometric_checks.py
index 57fb564f41108e9f5bfb2d9c1a6a896184839c5a..bca781c7ec963dce223920465aaab8d2aea670c3 100644
--- a/aeri_qc/radiometric_checks.py
+++ b/aeri_qc/radiometric_checks.py
@@ -1,8 +1,8 @@
-from util import _compute_robust_zscore
+from aeri_qc.util import _compute_robust_zscore
 import pandas as pd
 import numpy as np
 import scipy.stats
-from all_checks import checklist
+from aeri_qc.all_checks import checklist
 
 hide_data_if_invalid = [
     'hbb_temp_outlier_check',
diff --git a/aeri_qc/scene_checks.py b/aeri_qc/scene_checks.py
index cd8e3e11f31fb7b664bb3c853868e8c49bca0982..7c9dfb6d50515eb53e33976c37b7ddbd96b0b07c 100644
--- a/aeri_qc/scene_checks.py
+++ b/aeri_qc/scene_checks.py
@@ -1,6 +1,6 @@
 import pandas as pd
 import numpy as np
-from all_checks import checklist
+from aeri_qc.all_checks import checklist
 
 @checklist.add_check(depends=['hatchOpen','sceneMirrorPosition'], affects_calibration=False, description='hatch is closed')
 def hatch_check(frame, parameters):
diff --git a/aeri_qc/state_checks.py b/aeri_qc/state_checks.py
index c6a42df50f2fb33914b81615361f545dfd244dc0..d6ad3437910b64855ac26bca0f73d2bbe5418a74 100644
--- a/aeri_qc/state_checks.py
+++ b/aeri_qc/state_checks.py
@@ -1,6 +1,6 @@
 import pandas as pd
 import numpy as np
-from all_checks import checklist
+from aeri_qc.all_checks import checklist
 
 @checklist.add_check(depends=['detectorTemp'], affects_calibration=True, description='detector temperature too high')
 def detector_check(frame, parameters):
diff --git a/aeri_qc/thermal_checks.py b/aeri_qc/thermal_checks.py
index fe33e8a1ceba204c11af1f2ed6c5fdf16a2cbb8b..241ecc9316f18c4059a0d9825fa5804e91c19690 100644
--- a/aeri_qc/thermal_checks.py
+++ b/aeri_qc/thermal_checks.py
@@ -1,7 +1,7 @@
 import sklearn.covariance
 import scipy.stats
 import numpy as np
-from all_checks import checklist
+from aeri_qc.all_checks import checklist
 
 @checklist.add_check(depends=['HBBbottomTemp','HBBtopTemp','HBBapexTemp'], affects_calibration=True, description='HBB thermistors disagree')
 def hbb_covariance_check(frame, parameters):
diff --git a/setup.py b/setup.py
index 9b7ba9e7cb1256107b756edabb718c20b300b711..fa7243b9a502f303d327b0c779d3c94f8642beaf 100644
--- a/setup.py
+++ b/setup.py
@@ -7,6 +7,9 @@ setup(
         "numpy",
         "scipy",
         "pandas",
-        "scikit-learn"
+        "scikit-learn",
+        "dmv",
+        "aeri_tools",
+        "netCDF4"
     ]
 )